Spatial Omics

Spatial Transcriptomics Analysis

Materials and tutorials for analysing spatial omics data with Python.

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MOSAIK

A toolkit for integrating Xenium, CosMx, and MERFISH spatial transcriptomics data into standardised SpatialData objects.

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METABRIC-MX

Multimodal eXplorer for breast cancer spatial transcriptomics — integrating Xenium, metallomics, IF imaging, and H&E into unified SpatialData objects.