MOSAIK
Sep 1, 2024
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1 min read
MOSAIK enables cross-platform integration of spatial transcriptomics data from Xenium (10x Genomics), CosMx (NanoString), and MERFISH (Vizgen) into a common SpatialData framework.
The toolkit standardises coordinate systems, gene panels, and metadata to enable fair comparison and joint analysis across platforms.
Authors
Anthony Baptista
(he/him)
Senior Postdoctoral Research Fellow
I am a Senior Postdoctoral Research Fellow in Cancer Bioinformatics at King’s College London,
working in the Grigoriadis group within the School of Cancer & Pharmaceutical Sciences.
My research sits at the intersection of spatial transcriptomics, graph theory, explainable AI,
and tumour microenvironment biology, with a focus on breast and liver cancer.
I co-lead the KCL Spatial Biology Facility
and co-organise the Alan Turing Interest Group on Topology and Geometry for Data.