Projects

Cell-cell communications featured image

Cell-cell communications

A mathematical framework using walk with restart on spatial graphs.

MOSAIK featured image

MOSAIK

A toolkit for integrating Xenium, CosMx, and MERFISH spatial transcriptomics data into standardised SpatialData objects.

METABRIC-MX featured image

METABRIC-MX

Multimodal eXplorer for breast cancer spatial transcriptomics — integrating Xenium, metallomics, IF imaging, and H&E into unified SpatialData objects.