Spatial Transcriptomics Analysis
Sep 1, 2024
·
1 min read
Course materials and tutorials covering:
- Introduction to spatial transcriptomics technologies (Xenium, CosMx, MERFISH)
- Data loading and quality control with SpatialData
- Cell type annotation with CellTypist
- Spatial statistics and neighbourhood analysis
- Visualisation and interpretation
Materials coming soon.
Authors
Anthony Baptista
(he/him)
Senior Postdoctoral Research Fellow
I am a Senior Postdoctoral Research Fellow in Cancer Bioinformatics at King’s College London,
working in the Grigoriadis group within the School of Cancer & Pharmaceutical Sciences.
My research sits at the intersection of spatial transcriptomics, graph theory, explainable AI,
and tumour microenvironment biology, with a focus on breast and liver cancer.
I co-lead the KCL Spatial Biology Facility
and co-organise the Alan Turing Interest Group on Topology and Geometry for Data.